PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Carubv10006934m
Common NameCARUB_v10006934mg
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Capsella
Family bHLH
Protein Properties Length: 278aa    MW: 30572.9 Da    PI: 6.2634
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Carubv10006934mgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH21.44.5e-075094553
                     HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHH CS
              HLH  5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIks 53
                     + erE+ RRd++++ f eL   l ++      K +K++iL+ +++ +k+
  Carubv10006934m 50 KAEREKLRRDKLKEQFLELGNALDPN----RHKSDKVSILTDTIQMLKD 94
                     589********************997....689***********99885 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474597.98E-1344115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.3064595IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.46E-448100No hitNo description
PfamPF000101.1E-45094IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.9E-1150116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.3E-651101IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0009507Cellular Componentchloroplast
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 278 aa     Download sequence    Send to blast
MDQSKKPKTC SDSDFADDSS ASSSSSSTSG HNLRAEIVVE VNKEAVCSRK AEREKLRRDK  60
LKEQFLELGN ALDPNRHKSD KVSILTDTIQ MLKDVMNQVE RLKAEYATLS QESRELIQDK  120
SELREEKATL KSDIEILNAQ YQHRVRSMVP WIPHYTYPIP VVALSQGQST FIPYSASVVN  180
PLIEQASIQQ RSSSSGASSK QNSKSKSFSL DQGNDHKDDV GLELELKIHA SPLAQQDVSG  240
KENKESLTPT ANSSNSYSSS QTVQDSSPGG VNDILKA*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4937201e-168AB493720.1 Arabidopsis thaliana At4g36060 mRNA for hypothetical protein, partial cds, clone: RAAt4g36060.
GenBankAF2516961e-168AF251696.2 Arabidopsis thaliana putative transcription factor BHLH11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006285497.10.0hypothetical protein CARUB_v10006934mg
SwissprotQ8W2F21e-137BH011_ARATH; Transcription factor bHLH11
TrEMBLR0H1A00.0R0H1A0_9BRAS; Uncharacterized protein
STRINGfgenesh2_kg.7__460__AT4G36060.21e-135(Arabidopsis lyrata)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23532762
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36060.11e-119bHLH family protein